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NDI-matlab
NDI-matlab
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Installation
Tutorials
Tutorials
1 The NDI model
1 The NDI model
1.1 Introduction
1.2 Real world vocabulary
2 Analzying your first electrophysiology experiment with NDI
2 Analzying your first electrophysiology experiment with NDI
2.1 Reading an example dataset
2.2 Automating data reading with NDI
2.3 Using apps to analyze data (example - spike sorting)
2.4 Analyzing spiking responses and tuning curve properties
2.5 Searching NDI databases
3 Tutorials for new coders or new Matlab users
3 Tutorials for new coders or new Matlab users
3.1 Newbie version of your first electrophysiology experiment with NDI
7 Writing your own apps and calculators
7 Writing your own apps and calculators
7.2 Writing short calculations
Planned
Planned
4. Case studies in reading data in NDI
5. Making your own data pipeline in NDI
6. Making your own analysis app that uses NDI
7. Submitting your data to an archive
8. Search and analyze NDI databases on the web
Document reference
Document reference
animalsubject
app
base
dataset_remote
dataset_session_info
demoNDI
element
element_epoch
epochclocktimes
epochid
mock
oneepoch
projectvar
session
subject
subjectmeasurement
treatment
apps
apps
calculators
calculators
simple_calc
tuningcurve_calc
jrclust
jrclust
jrclust_clusters
markgarbage
markgarbage
valid_interval
spikeextractor
spikeextractor
spike_extraction_parameters
spike_extraction_parameters_modification
spikewaves
spikesorter
spikesorter
sorting_parameters
spike_clusters
vhlab_voltage2firingrate
vhlab_voltage2firingrate
binnedspikeratevm
vmneuralresponseresiduals
vmspikefilteringparameters
vmspikefit
vmspikesummary
daq
daq
daqmetadatareader
daqreader
daqreader_ndr
daqsystem
filenavigator
syncgraph
syncrule
data
data
binaryseries_parameters
fitcurve
ngrid
ontologyTableRow
ingestion
ingestion
daqmetadatareader_epochdata_ingested
daqreader_epochdata_ingested
daqreader_mfdaq_epochdata_ingested
epochfiles_ingested
metadata_editor
syncrule_mapping
metadata
metadata
openminds
openminds_element
openminds_stimulus
openminds_subject
neuron
neuron
neuron_extracellular
probe
probe
electrode_offset_voltage
probe_geometry
probe_location
site2channelmap
stimulus
stimulus
control_stimulus_ids
stimulus_bath
stimulus_parameter
stimulus_parameter_table
stimulus_presentation
stimulus_response
stimulus_response_scalar
stimulus_response_scalar_parameters
stimulus_response_scalar_parameters_basic
stimulus_tuningcurve
virus_injection
vision
vision
oridir
oridir
orientation_direction_tuning
Code reference
Code reference
ndi_Init
ndi_install
ndi PACKAGE
ndi PACKAGE
ndi.app
ndi.cache
ndi.calculator
ndi.database
ndi.dataset
ndi.document
ndi.documentservice
ndi.element
ndi.epoch
ndi.filesep
ndi.ido
ndi.neuron
ndi.ontology
ndi.pipeline
ndi.probe
ndi.query
ndi.session
ndi.subject
ndi.toolboxdir
ndi.validate
ndi.version
app PACKAGE
app PACKAGE
ndi.app.appdoc
ndi.app.markgarbage
ndi.app.oridirtuning
ndi.app.spikeextractor
ndi.app.spikesorter
stimulus PACKAGE
stimulus PACKAGE
ndi.app.stimulus.decoder
ndi.app.stimulus.tuning_response
calc PACKAGE
calc PACKAGE
example PACKAGE
example PACKAGE
ndi.calc.example.simple
stimulus PACKAGE
stimulus PACKAGE
ndi.calc.stimulus.tuningcurve
cloud PACKAGE
cloud PACKAGE
ndi.cloud.authenticate
ndi.cloud.downloadDataset
ndi.cloud.syncDataset
ndi.cloud.uilogin
ndi.cloud.uploadDataset
admin PACKAGE
admin PACKAGE
ndi.cloud.admin.checkSubmission
ndi.cloud.admin.createNewDOI
ndi.cloud.admin.registerDatasetDOI
crossref PACKAGE
crossref PACKAGE
ndi.cloud.admin.crossref.Constants
ndi.cloud.admin.crossref.convertCloudDatasetToCrossrefDataset
ndi.cloud.admin.crossref.createDatabaseMetadata
ndi.cloud.admin.crossref.createDoiBatchHeadElement
ndi.cloud.admin.crossref.createDoiBatchSubmission
conversion PACKAGE
conversion PACKAGE
ndi.cloud.admin.crossref.conversion.convertContributors
ndi.cloud.admin.crossref.conversion.convertDatasetDate
ndi.cloud.admin.crossref.conversion.convertFunding
ndi.cloud.admin.crossref.conversion.convertLicense
ndi.cloud.admin.crossref.conversion.convertRelatedPublications
api PACKAGE
api PACKAGE
ndi.cloud.api.url
auth PACKAGE
auth PACKAGE
ndi.cloud.api.auth.change_password
ndi.cloud.api.auth.login
ndi.cloud.api.auth.logout
ndi.cloud.api.auth.resend_confirmation
ndi.cloud.api.auth.reset_password
ndi.cloud.api.auth.verify_user
datasets PACKAGE
datasets PACKAGE
ndi.cloud.api.datasets.bulk_delete_documents
ndi.cloud.api.datasets.create_dataset
ndi.cloud.api.datasets.create_dataset_branch
ndi.cloud.api.datasets.delete_dataset
ndi.cloud.api.datasets.get_branches
ndi.cloud.api.datasets.get_dataset
ndi.cloud.api.datasets.get_file_collection_upload_url
ndi.cloud.api.datasets.get_file_details
ndi.cloud.api.datasets.get_file_upload_url
ndi.cloud.api.datasets.get_published
ndi.cloud.api.datasets.get_raw_file_upload_url
ndi.cloud.api.datasets.get_unpublished
ndi.cloud.api.datasets.list_datasets
ndi.cloud.api.datasets.publish_dataset
ndi.cloud.api.datasets.submit_dataset
ndi.cloud.api.datasets.unpublish_dataset
ndi.cloud.api.datasets.update_dataset
documents PACKAGE
documents PACKAGE
ndi.cloud.api.documents.add_document
ndi.cloud.api.documents.add_document_as_file
ndi.cloud.api.documents.delete_document
ndi.cloud.api.documents.get_bulk_download_url
ndi.cloud.api.documents.get_bulk_upload_url
ndi.cloud.api.documents.get_document
ndi.cloud.api.documents.list_dataset_documents
ndi.cloud.api.documents.update_document
files PACKAGE
files PACKAGE
ndi.cloud.api.files.get_file_details
ndi.cloud.api.files.get_file_upload_url
ndi.cloud.api.files.get_raw_file_upload_url
ndi.cloud.api.files.put_files
users PACKAGE
users PACKAGE
ndi.cloud.api.users.create_user
ndi.cloud.api.users.get_user
download PACKAGE
download PACKAGE
ndi.cloud.download.dataset
ndi.cloud.download.dataset_documents
ndi.cloud.download.download_dataset_files
ndi.cloud.download.download_document_collection
ndi.cloud.download.jsons2documents
internal PACKAGE
internal PACKAGE
ndi.cloud.download.internal.set_file_info
ndi.cloud.download.internal.structs_to_ndi_documents
internal PACKAGE
internal PACKAGE
ndi.cloud.internal.create_remote_dataset_doc
ndi.cloud.internal.decode_jwt
ndi.cloud.internal.getCloudDatasetIdForLocalDataset
ndi.cloud.internal.get_active_token
ndi.cloud.internal.get_token_expiration
ndi.cloud.internal.get_uploaded_document_ids
ndi.cloud.internal.get_uploaded_file_ids
ndi.cloud.internal.get_weboptions_with_auth_header
sync PACKAGE
sync PACKAGE
ndi.cloud.sync.SyncOptions
ndi.cloud.sync.downloadNew
ndi.cloud.sync.mirrorFromRemote
ndi.cloud.sync.mirrorToRemote
ndi.cloud.sync.twoWaySync
ndi.cloud.sync.uploadNew
enum PACKAGE
enum PACKAGE
ndi.cloud.sync.enum.SyncMode
internal PACKAGE
internal PACKAGE
ndi.cloud.sync.internal.Constants
ndi.cloud.sync.internal.deleteLocalDocuments
ndi.cloud.sync.internal.deleteRemoteDocuments
ndi.cloud.sync.internal.downloadNdiDocuments
ndi.cloud.sync.internal.getFileUidsFromDocuments
ndi.cloud.sync.internal.listLocalDocuments
ndi.cloud.sync.internal.listRemoteDocumentIds
ndi.cloud.sync.internal.updateFileInfoForLocalFiles
ndi.cloud.sync.internal.updateFileInfoForRemoteFiles
ndi.cloud.sync.internal.upload_files_for_dataset_documents
index PACKAGE
index PACKAGE
ndi.cloud.sync.internal.index.createSyncIndexStruct
ndi.cloud.sync.internal.index.getIndexFilepath
ndi.cloud.sync.internal.index.readSyncIndex
ndi.cloud.sync.internal.index.updateSyncIndex
ndi.cloud.sync.internal.index.writeSyncIndex
ui PACKAGE
ui PACKAGE
dialog PACKAGE
dialog PACKAGE
ndi.cloud.ui.dialog.selectCloudDataset
upload PACKAGE
upload PACKAGE
ndi.cloud.upload.new_dataset
ndi.cloud.upload.scan_for_upload
ndi.cloud.upload.upload_document_collection
ndi.cloud.upload.upload_to_NDI_cloud
ndi.cloud.upload.zip_for_upload
internal PACKAGE
internal PACKAGE
ndi.cloud.upload.internal.zip_documents_for_upload
for_deletion FOLDER
for_deletion FOLDER
ndi.cloud.upload/for_deletion.update_cloud_metadata
ndi.cloud.upload/for_deletion.update_cloud_metadata_struct
old FOLDER
old FOLDER
ndi.cloud.upload/old.test_upload
ndi.cloud.upload/old.test_upload_old
ndi.cloud.upload/old.upload_dataset_database
ndi.cloud.upload/old.upload_to_NDI_cloud_bulk
utility PACKAGE
utility PACKAGE
ndi.cloud.utility.create_cloud_metadata_struct
ndi.cloud.utility.mustBeValidMetadata
common PACKAGE
common PACKAGE
ndi.common.PathConstants
ndi.common.assertDIDInstalled
ndi.common.getCache
ndi.common.getDatabaseHierarchy
ndi.common.getLogger
daq PACKAGE
daq PACKAGE
ndi.daq.daqsystemstring
ndi.daq.metadatareader
ndi.daq.reader
ndi.daq.system
metadatareader PACKAGE
metadatareader PACKAGE
ndi.daq.metadatareader.NewStimStims
ndi.daq.metadatareader.NielsenLabStims
reader PACKAGE
reader PACKAGE
ndi.daq.reader.mfdaq
mfdaq PACKAGE
mfdaq PACKAGE
ndi.daq.reader.mfdaq.blackrock
ndi.daq.reader.mfdaq.cedspike2
ndi.daq.reader.mfdaq.intan
ndi.daq.reader.mfdaq.ndr
ndi.daq.reader.mfdaq.spikegadgets
system PACKAGE
system PACKAGE
ndi.daq.system.mfdaq
premature FOLDER
premature FOLDER
ndi.daq/premature.ndi_daqsystem_image
ndi.daq/premature.ndi_daqsystem_image_tiffstack
ndi.daq/premature.ndi_image
ndi.daq/premature.ndi_image_tiffstack
data PACKAGE
data PACKAGE
ndi.data.evaluate_fitcurve
database PACKAGE
database PACKAGE
ndi.database.binarydoc
ndi.database.ingestion_help
app PACKAGE
app PACKAGE
dataset_viewer PACKAGE
dataset_viewer PACKAGE
utility PACKAGE
utility PACKAGE
ndi.database.app.dataset_viewer.utility.listLocalDatasets
ndi.database.app.dataset_viewer.utility.listRemoteDatasets
fun PACKAGE
fun PACKAGE
ndi.database.fun.copy_session_to_dataset
ndi.database.fun.copydocfile2temp
ndi.database.fun.createGenBankControlledVocabulary
ndi.database.fun.createNIFbrainareas
ndi.database.fun.create_new_database
ndi.database.fun.database2json
ndi.database.fun.databasehierarchyinit
ndi.database.fun.dataset_metadata
ndi.database.fun.docs2graph
ndi.database.fun.docs_from_ids
ndi.database.fun.extract_docs_files
ndi.database.fun.find_ingested_docs
ndi.database.fun.findallantecedents
ndi.database.fun.findalldependencies
ndi.database.fun.finddocs_elementEpochType
ndi.database.fun.finddocs_missing_dependencies
ndi.database.fun.lookup_uberon_term
ndi.database.fun.ndi_document2ndi_object
ndi.database.fun.ndicloud_ontology_lookup
ndi.database.fun.openMINDSobj2ndi_document
ndi.database.fun.openMINDSobj2struct
ndi.database.fun.opendatabase
ndi.database.fun.plotinteractivedocgraph
ndi.database.fun.projectvardef
ndi.database.fun.queryNCIm
ndi.database.fun.readGenBankNames
ndi.database.fun.readGenBankNodes
ndi.database.fun.read_presentation_time_structure
ndi.database.fun.readtablechar
ndi.database.fun.uberon_ontology_lookup
ndi.database.fun.write_presentation_time_structure
ndi.database.fun.writetablechar
implementations PACKAGE
implementations PACKAGE
binarydoc PACKAGE
binarydoc PACKAGE
ndi.database.implementations.binarydoc.matfid
database PACKAGE
database PACKAGE
ndi.database.implementations.database.didsqlite
ndi.database.implementations.database.matlabdumbjsondb
ndi.database.implementations.database.matlabdumbjsondb2
fun PACKAGE
fun PACKAGE
ndi.database.implementations.fun.doc2ingesteddbfilename
ndi.database.implementations.fun.expell
ndi.database.implementations.fun.expell_plan
ndi.database.implementations.fun.ingest
ndi.database.implementations.fun.ingest_plan
internal PACKAGE
internal PACKAGE
ndi.database.internal.list_binary_files
metadata PACKAGE
metadata PACKAGE
ndi.database.metadata.table2treatment
metadata_app PACKAGE
metadata_app PACKAGE
checker PACKAGE
checker PACKAGE
ndi.database.metadata_app.checker.subject
class PACKAGE
class PACKAGE
ndi.database.metadata_app.class.Affiliation
ndi.database.metadata_app.class.AffiliationData
ndi.database.metadata_app.class.AuthorData
ndi.database.metadata_app.class.DatasetData
ndi.database.metadata_app.class.DatasetVersionData
ndi.database.metadata_app.class.DeviceType
ndi.database.metadata_app.class.Electrode
ndi.database.metadata_app.class.ElectrodeArray
ndi.database.metadata_app.class.License
ndi.database.metadata_app.class.MiscellaneousProbe
ndi.database.metadata_app.class.Organization
ndi.database.metadata_app.class.Pipette
ndi.database.metadata_app.class.Probe
ndi.database.metadata_app.class.ProbeData
ndi.database.metadata_app.class.Species
ndi.database.metadata_app.class.SpeciesData
ndi.database.metadata_app.class.Strain
ndi.database.metadata_app.class.Subject
ndi.database.metadata_app.class.SubjectData
ndi.database.metadata_app.class.test
fun PACKAGE
fun PACKAGE
ndi.database.metadata_app.fun.SearchSpecies
ndi.database.metadata_app.fun.checkValidRORID
ndi.database.metadata_app.fun.expandDropDownItems
ndi.database.metadata_app.fun.generateShortName
ndi.database.metadata_app.fun.getCCByLicences
ndi.database.metadata_app.fun.getOpenMindsInstances
ndi.database.metadata_app.fun.getOpenmindsInstanceFile
ndi.database.metadata_app.fun.getOrcId
ndi.database.metadata_app.fun.getOrcIdSearchUrl
ndi.database.metadata_app.fun.getPublicationTitleFromDoi
ndi.database.metadata_app.fun.getPubmedIdFromDoi
ndi.database.metadata_app.fun.getRequiredFields
ndi.database.metadata_app.fun.getRorId
ndi.database.metadata_app.fun.getRorIdSearchUrl
ndi.database.metadata_app.fun.getSpeciesInfo
ndi.database.metadata_app.fun.loadExperimentalApproach
ndi.database.metadata_app.fun.loadInstancesToListBox
ndi.database.metadata_app.fun.loadInstancesToTreeCheckbox
ndi.database.metadata_app.fun.loadOpenMindsInstanceCatalog
ndi.database.metadata_app.fun.loadProbes
ndi.database.metadata_app.fun.loadSubjects
ndi.database.metadata_app.fun.loadTechniquesEmployed
ndi.database.metadata_app.fun.loadUnits
ndi.database.metadata_app.fun.loadUserInstanceCatalog
ndi.database.metadata_app.fun.loadUserInstances
ndi.database.metadata_app.fun.mustBeValidDate
ndi.database.metadata_app.fun.parseOpenMINDSAtID
ndi.database.metadata_app.fun.readExistingMetadata
ndi.database.metadata_app.fun.resolveRelatedPublication
ndi.database.metadata_app.fun.saveUserInstances
ndi.database.metadata_app.fun.save_dataset_docs
ndi.database.metadata_app.fun.submit_dataset
metadata_ds_core PACKAGE
metadata_ds_core PACKAGE
ndi.database.metadata_ds_core.Contents
ndi.database.metadata_ds_core.check_metadata_cloud_inputs
ndi.database.metadata_ds_core.check_metadata_inputs
ndi.database.metadata_ds_core.convertDatasetInfoToDocument
ndi.database.metadata_ds_core.convertDocumentToDatasetInfo
ndi.database.metadata_ds_core.convertFormDataToDocuments
ndi.database.metadata_ds_core.load_author_from_ndidocument
ndi.database.metadata_ds_core.metadata_to_json
ndi.database.metadata_ds_core.ndidataset2metadataeditorstruct
ndi.database.metadata_ds_core.saveEditor2Doc
dataset PACKAGE
dataset PACKAGE
ndi.dataset.dir
docs PACKAGE
docs PACKAGE
ndi.docs.all_documents2markdown
ndi.docs.build
ndi.docs.calcbuild
ndi.docs.concatenateFiles
ndi.docs.docfun
ndi.docs.document2markdown
ndi.docs.schemastructure2docstructure
element PACKAGE
element PACKAGE
ndi.element.downsample
ndi.element.missingepochs
ndi.element.oneepoch
ndi.element.oneepoch_bkup
ndi.element.timeseries
epoch PACKAGE
epoch PACKAGE
ndi.epoch.epochprobemap
ndi.epoch.epochprobemap_daqsystem
ndi.epoch.epochrange
ndi.epoch.epochset
ndi.epoch.findepochnode
epochset PACKAGE
epochset PACKAGE
ndi.epoch.epochset.param
example PACKAGE
example PACKAGE
fun PACKAGE
fun PACKAGE
ndi.example.fun.element2spiketimes
ndi.example.fun.find_epochids_with_temperature
ndi.example.fun.getEarlyEyeOpening
ndi.example.fun.get_unique_bath_components
ndi.example.fun.mfdaqsysepoch2timetablestruct
ndi.example.fun.probe2elements
ndi.example.fun.probe2spiketimes
tutorial PACKAGE
tutorial PACKAGE
ndi.example.tutorial.plottreeshrewdata
ndi.example.tutorial.tutorial_02_01
ndi.example.tutorial.tutorial_02_02
ndi.example.tutorial.tutorial_02_03
ndi.example.tutorial.tutorial_02_04
ndi.example.tutorial.tutorial_02_05
file PACKAGE
file PACKAGE
ndi.file.navigator
ndi.file.pfilemirror
ndi.file.temp_fid
ndi.file.temp_name
navigator PACKAGE
navigator PACKAGE
ndi.file.navigator.epochdir
type PACKAGE
type PACKAGE
ndi.file.type.mfdaq_epoch_channel
fun PACKAGE
fun PACKAGE
ndi.fun.assertAddonOnPath
ndi.fun.channelname2prefixnumber
ndi.fun.check_Matlab_toolboxes
ndi.fun.console
ndi.fun.convertoldnsd2ndi
ndi.fun.debuglog
ndi.fun.epochDocTable
ndi.fun.errlog
ndi.fun.find_calc_directories
ndi.fun.name2variableName
ndi.fun.plot_extracellular_spikeshapes
ndi.fun.probeDocTable
ndi.fun.pseudorandomint
ndi.fun.run_Linux_checks
ndi.fun.stimulustemporalfrequency
ndi.fun.subjectDocTable
ndi.fun.syslog
ndi.fun.timestamp
calc PACKAGE
calc PACKAGE
ndi.fun.calc.stimulus_tuningcurve_log
doc PACKAGE
doc PACKAGE
ndi.fun.doc.ontologyTableRowDoc2Table
ndi.fun.doc.ontologyTableRowVars
ndi.fun.doc.t0_t1cell2array
subject PACKAGE
subject PACKAGE
ndi.fun.doc.subject.makeSpeciesStrainSex
epoch PACKAGE
epoch PACKAGE
ndi.fun.epoch.epochid2element
ndi.fun.epoch.filename2epochid
plot PACKAGE
plot PACKAGE
ndi.fun.plot.multichan
stimulus PACKAGE
stimulus PACKAGE
ndi.fun.stimulus.f0_f1_responses
ndi.fun.stimulus.findMixtureName
ndi.fun.stimulus.tuning_curve_to_response_type
table PACKAGE
table PACKAGE
ndi.fun.table.identifyMatchingRows
ndi.fun.table.identifyValidRows
ndi.fun.table.join
ndi.fun.table.moveColumnsLeft
ndi.fun.table.vstack
gui PACKAGE
gui PACKAGE
ndi.gui.Data
ndi.gui.Icon
ndi.gui.Lab
ndi.gui.docViewer
ndi.gui.gui
ndi.gui.gui_v2
component PACKAGE
component PACKAGE
ndi.gui.component.CommandWindowProgressMonitor
ndi.gui.component.NDIProgressBar
ndi.gui.component.ProgressBarWindow
abstract PACKAGE
abstract PACKAGE
ndi.gui.component.abstract.ProgressMonitor
internal PACKAGE
internal PACKAGE
ndi.gui.component.internal.AsynchProgressTracker
ndi.gui.component.internal.ProgressTracker
event PACKAGE
event PACKAGE
ndi.gui.component.internal.event.MessageUpdatedEventData
ndi.gui.component.internal.event.ProgressUpdatedEventData
utility PACKAGE
utility PACKAGE
ndi.gui.utility.centerFigure
mock PACKAGE
mock PACKAGE
ndi.mock.ctest
fun PACKAGE
fun PACKAGE
ndi.mock.fun.clear
ndi.mock.fun.stimulus_presentation
ndi.mock.fun.stimulus_response
ndi.mock.fun.subject_stimulator_neuron
ontology PACKAGE
ontology PACKAGE
ndi.ontology.CHEBI
ndi.ontology.CL
ndi.ontology.EMPTY
ndi.ontology.NCBITaxon
ndi.ontology.NCIm
ndi.ontology.NDIC
ndi.ontology.OM
ndi.ontology.PATO
ndi.ontology.PubChem
ndi.ontology.RRID
ndi.ontology.Uberon
probe PACKAGE
probe PACKAGE
ndi.probe.timeseries
fun PACKAGE
fun PACKAGE
ndi.probe.fun.getProbeTypeMap
ndi.probe.fun.initProbeTypeMap
ndi.probe.fun.probestruct2probe
timeseries PACKAGE
timeseries PACKAGE
ndi.probe.timeseries.mfdaq
ndi.probe.timeseries.stimulator
session PACKAGE
session PACKAGE
ndi.session.dir
ndi.session.empty_id
ndi.session.mock
ndi.session.sessiontable
setup PACKAGE
setup PACKAGE
ndi.setup.angeluccilab
ndi.setup.dbkatzlab
ndi.setup.lab
ndi.setup.marderlab
ndi.setup.vhlab
ndi.setup.yangyangwang
NDIMaker PACKAGE
NDIMaker PACKAGE
ndi.setup.NDIMaker.epochProbeMapMaker
ndi.setup.NDIMaker.sessionMaker
ndi.setup.NDIMaker.stimulusDocMaker
ndi.setup.NDIMaker.subjectMaker
ndi.setup.NDIMaker.tableDocMaker
conv PACKAGE
conv PACKAGE
dabrowska PACKAGE
dabrowska PACKAGE
ndi.setup.conv.dabrowska.createSubjectInformation
ndi.setup.conv.dabrowska.doImport
ndi.setup.conv.dabrowska.working
datalocation PACKAGE
datalocation PACKAGE
ndi.setup.conv.datalocation.processFileManifest
gluckman PACKAGE
gluckman PACKAGE
ndi.setup.conv.gluckman.binepochprobemap
ndi.setup.conv.gluckman.channelname2probename
ndi.setup.conv.gluckman.channelnames2daqsystemstrings
marder PACKAGE
marder PACKAGE
ndi.setup.conv.marder.abf2probetable
ndi.setup.conv.marder.abfepochprobemap
ndi.setup.conv.marder.abfprobetable2probemap
ndi.setup.conv.marder.channelname2probename
ndi.setup.conv.marder.channelnames2daqsystemstrings
ndi.setup.conv.marder.channelnametable2probename
ndi.setup.conv.marder.demo
ndi.setup.conv.marder.makeVoltageOffsets
ndi.setup.conv.marder.makesubjects
ndi.setup.conv.marder.marderbath
ndi.setup.conv.marder.marderprobe2uberon
ndi.setup.conv.marder.mixtureStr2mixtureTable
ndi.setup.conv.marder.plot_epoch
ndi.setup.conv.marder.postsetup
ndi.setup.conv.marder.preptemp
ndi.setup.conv.marder.preptemptable
ndi.setup.conv.marder.presetup
ndi.setup.conv.marder.smrepochprobemap
ndi.setup.conv.marder.temptable2stimulusparameters
vhlab PACKAGE
vhlab PACKAGE
ndi.setup.conv.vhlab.fix_empty_records
daq PACKAGE
daq PACKAGE
ndi.setup.daq.addDaqSystems
metadatareader PACKAGE
metadatareader PACKAGE
ndi.setup.daq.metadatareader.AngelucciStims
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reader PACKAGE
reader PACKAGE
mfdaq PACKAGE
mfdaq PACKAGE
stimulus PACKAGE
stimulus PACKAGE
ndi.setup.daq.reader.mfdaq.stimulus.angelucci_visstim
ndi.setup.daq.reader.mfdaq.stimulus.nielsenvisintan
ndi.setup.daq.reader.mfdaq.stimulus.vhlabvisspike2
system PACKAGE
system PACKAGE
ndi.setup.daq.system.export_angeluccilab_daq_systems
ndi.setup.daq.system.export_dbkatzlab_daq_systems
ndi.setup.daq.system.export_marderlab_daq_systems
ndi.setup.daq.system.export_vhlab_daq_systems
ndi.setup.daq.system.export_yangyangwang_daq_systems
ndi.setup.daq.system.listDaqSystemNames
deprecating FOLDER
deprecating FOLDER
ndi.setup.daq.system/deprecating.angeluccilab
ndi.setup.daq.system/deprecating.dbkatzlab
ndi.setup.daq.system/deprecating.marderlab
ndi.setup.daq.system/deprecating.vhlab
ndi.setup.daq.system/deprecating.yangyangwang
epoch PACKAGE
epoch PACKAGE
ndi.setup.epoch.epochprobemap_daqsystem_vhlab
stimulus PACKAGE
stimulus PACKAGE
kjnielsenlab PACKAGE
kjnielsenlab PACKAGE
ndi.setup.stimulus.kjnielsenlab.extractStimulusParameters
vhlab PACKAGE
vhlab PACKAGE
ndi.setup.stimulus.vhlab.add_stimulus_approach
test PACKAGE
test PACKAGE
ndi.test.cache
app PACKAGE
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ndi.test.app.markgarbage
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ndi.test.cloud.api.add_document_test
ndi.test.cloud.api.dataset_branch_test
ndi.test.cloud.api.delete_documents_test
ndi.test.cloud.api.pipeline
ndi.test.cloud.api.submit_publish_dataset
ndi.test.cloud.api.upload_sample_test
daq PACKAGE
daq PACKAGE
ndi.test.daq.blackrock
ndi.test.daq.build_intan_flat_exp
ndi.test.daq.intan_flat
ndi.test.daq.intan_flat_metadata
ndi.test.daq.intan_flat_saved
ndi.test.daq.sg_flat
ndi.test.daq.test_ndi_device_image_tiffstack
ndi.test.daq.test_ndi_image_tiffstack_multipleepoch
database PACKAGE
database PACKAGE
ndi.test.database.all_doc_fields
ndi.test.database.load_all_docs
ndi.test.database.test_ndi_document
ndi.test.database.test_ndi_document_jsons
core PACKAGE
core PACKAGE
ndi.test.database.core.test_ndi_daq_documents
ndi.test.database.core.test_ndi_daqreader_documents
ndi.test.database.core.test_ndi_daqsystem_documents
ndi.test.database.core.test_ndi_filenavigator_documents
ndi.test.database.core.test_ndi_syncgraph_documents
ndi.test.database.core.test_ndi_syncrule_documents
dataset PACKAGE
dataset PACKAGE
ndi.test.dataset.compare
ndi.test.dataset.manual
debug PACKAGE
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ndi.test.debug.ndi_debug_database_stats
element PACKAGE
element PACKAGE
ndi.test.element.test_ndi_element
file PACKAGE
file PACKAGE
ndi.test.file.compare_fileobj
filenavigator PACKAGE
filenavigator PACKAGE
ndi.test.filenavigator.test_ndi_filenavigator
ndi.test.filenavigator.test_ndi_filenavigator_fileIDfunction
gui PACKAGE
gui PACKAGE
ndi.test.gui.displayDocViewer
ingest PACKAGE
ingest PACKAGE
ndi.test.ingest.compare
ndi.test.ingest.mfdaq
ndi.test.ingest.mfdaq_compare
ndi.test.ingest.syncgraph
misc PACKAGE
misc PACKAGE
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pipeline PACKAGE
pipeline PACKAGE
ndi.test.pipeline.edit
probe PACKAGE
probe PACKAGE
ndi.test.probe.test_ndi_probe
session PACKAGE
session PACKAGE
ndi.test.session.ndi_test_sessiontable
setup PACKAGE
setup PACKAGE
ndi.test.setup.angeluccilab
ndi.test.setup.dbkatzlab_narendra
ndi.test.setup.marderlab_hamood
testsuite PACKAGE
testsuite PACKAGE
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time PACKAGE
time PACKAGE
ndi.test.time.filefind
tutorial PACKAGE
tutorial PACKAGE
ndi.test.tutorial.tutorial_02_set
time PACKAGE
time PACKAGE
ndi.time.clocktype
ndi.time.syncgraph
ndi.time.syncrule
ndi.time.timemapping
ndi.time.timereference
ndi.time.timeseries
fun PACKAGE
fun PACKAGE
ndi.time.fun.samples2times
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syncrule PACKAGE
syncrule PACKAGE
ndi.time.syncrule.commontriggers
ndi.time.syncrule.filefind
ndi.time.syncrule.filematch
util PACKAGE
util PACKAGE
ndi.util.choosefile
ndi.util.choosefileordir
ndi.util.downsampleTimeseries
ndi.util.toolboxdir
openminds PACKAGE
openminds PACKAGE
ndi.util.openminds.find_instance_name
ndi.util.openminds.find_techniques_names
validators PACKAGE
validators PACKAGE
ndi.validators.mustBeEpochInput
ndi.validators.mustBeID
ndi.validators.mustBeNumericClass
ndi.validators.mustHaveRequiredColumns
ndi.validators.mustMatchRegex
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