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Code reference
- vlt_Init
- vlt PACKAGE
  vlt PACKAGE
  - vlt.globals
  - app PACKAGE
    app PACKAGE
    
    vlt.app.log
  - batch PACKAGE
    batch PACKAGE
    
    vlt.batch.simple_batch
  - colorspace PACKAGE
    colorspace PACKAGE
    
    vlt.colorspace.angle2ybgr
    
    vlt.colorspace.angle2ycgr
    
    vlt.colorspace.cmyk2rgb
    
    vlt.colorspace.rgb2cmyk
  - config PACKAGE
    config PACKAGE
    
    vlt.config.add_config_file
    
    vlt.config.config_dirname
  - daq PACKAGE
    daq PACKAGE
    
    MCCUSB1208FS PACKAGE
    MCCUSB1208FS PACKAGE
    
    vlt.daq.MCCUSB1208FS.MCCUSB1208FS_AcquireSimpleDaq
    
    vlt.daq.MCCUSB1208FS.MCCUSB1208FS_CloseSimpleDaq
    
    vlt.daq.MCCUSB1208FS.MCCUSB1208FS_OpenSimpleDaq
    
    dummyekgeegdaq PACKAGE
    dummyekgeegdaq PACKAGE
    
    vlt.daq.dummyekgeegdaq.dummyekgeegdaq_AcquireSimpleDaq
    
    vlt.daq.dummyekgeegdaq.dummyekgeegdaq_CloseSimpleDaq
    
    vlt.daq.dummyekgeegdaq.dummyekgeegdaq_OpenSimpleDaq
    
    simpledaq PACKAGE
    simpledaq PACKAGE
    
    vlt.daq.simpledaq.AcquireSimpleDaq
    
    vlt.daq.simpledaq.CloseSimpleDaq
    
    vlt.daq.simpledaq.NewSimpleDaq
    
    vlt.daq.simpledaq.OpenSimpleDaq
  - data PACKAGE
    data PACKAGE
    
    vlt.data.assign
    
    vlt.data.cache
    
    vlt.data.catCellStr
    
    vlt.data.catstructfields
    
    vlt.data.cell2group
    
    vlt.data.cell2matn
    
    vlt.data.cell2mlstr
    
    vlt.data.cell2str
    
    vlt.data.cellarray2mat
    
    vlt.data.celloritem
    
    vlt.data.celltable2struct
    
    vlt.data.columnize_struct
    
    vlt.data.colvec
    
    vlt.data.conditional
    
    vlt.data.conditiongroup2cell
    
    vlt.data.deleteallchildren
    
    vlt.data.dropnan
    
    vlt.data.dropzero
    
    vlt.data.emptystruct
    
    vlt.data.eqemp
    
    vlt.data.eqlen
    
    vlt.data.eqtot
    
    vlt.data.equnique
    
    vlt.data.fieldsearch
    
    vlt.data.findclosest
    
    vlt.data.findclosestpoint
    
    vlt.data.findrowvec
    
    vlt.data.hasAllFields
    
    vlt.data.hashmatlabvariable
    
    vlt.data.isboolean
    
    vlt.data.isempty_cell
    
    vlt.data.isfullfield
    
    vlt.data.isint
    
    vlt.data.islikevarname
    
    vlt.data.ispos
    
    vlt.data.isunix_sv
    
    vlt.data.jsonencodenan
    
    vlt.data.listofvars
    
    vlt.data.matrow2cell
    
    vlt.data.mlstr2var
    
    vlt.data.namevaluepair
    
    vlt.data.nanstderr
    
    vlt.data.numornan
    
    vlt.data.onoff
    
    vlt.data.prettyjson
    
    vlt.data.rowvec
    
    vlt.data.savevar
    
    vlt.data.simpletable
    
    vlt.data.sizeeq
    
    vlt.data.sortorder
    
    vlt.data.sortstruct
    
    vlt.data.str2nume
    
    vlt.data.streq
    
    vlt.data.string2cell
    
    vlt.data.struct2mlstr
    
    vlt.data.struct2namevaluepair
    
    vlt.data.struct2str
    
    vlt.data.struct2tabstr
    
    vlt.data.struct2var
    
    vlt.data.structdiff
    
    vlt.data.structfindfield
    
    vlt.data.structfullfields
    
    vlt.data.structmerge
    
    vlt.data.structpartialmatch
    
    vlt.data.structwhatvaries
    
    vlt.data.tabstr2struct
    
    vlt.data.text2struct
    
    vlt.data.uniq
    
    vlt.data.valid_varname
    
    vlt.data.var2struct
    
    vlt.data.workspace2struct
  - db PACKAGE
    db PACKAGE
    
    vlt.db.struct_name_value_search
  - docs PACKAGE
    docs PACKAGE
    
    vlt.docs.build
    
    vlt.docs.class2help
    
    vlt.docs.markdownoutput2objectstruct
    
    vlt.docs.matlab2markdown
    
    vlt.docs.mkdocsnavtext
    
    vlt.docs.relative_url4object
  - file PACKAGE
    file PACKAGE
    
    vlt.file.addline
    
    vlt.file.arefilessame
    
    vlt.file.cellstr2text
    
    vlt.file.checkout_lock_file
    
    vlt.file.combinepdf
    
    vlt.file.createpath
    
    vlt.file.dirlist_trimdots
    
    vlt.file.dirstrip
    
    vlt.file.drivepath
    
    vlt.file.dumbjsondb
    
    vlt.file.filebackup
    
    vlt.file.filediff
    
    vlt.file.fileid_value
    
    vlt.file.filename_value
    
    vlt.file.filenamesearchreplace
    
    vlt.file.fileobj
    
    vlt.file.filesepconversion
    
    vlt.file.findfilegroups
    
    vlt.file.findfiletype
    
    vlt.file.fixpath
    
    vlt.file.fixtilde
    
    vlt.file.fullfilename
    
    vlt.file.getAllFiles
    
    vlt.file.isfile
    
    vlt.file.isfilepathroot
    
    vlt.file.isfolder
    
    vlt.file.isurl
    
    vlt.file.linpath2mac
    
    vlt.file.load2celllist
    
    vlt.file.loadIgor
    
    vlt.file.loadStructArray
    
    vlt.file.read_tab_delimited_file
    
    vlt.file.readlabviewarray
    
    vlt.file.readplainmat
    
    vlt.file.relativeFilename
    
    vlt.file.release_lock_file
    
    vlt.file.rename_mfiles_functions
    
    vlt.file.saveStructArray
    
    vlt.file.saveasv73
    
    vlt.file.searchreplacefiles_shell
    
    vlt.file.str2text
    
    vlt.file.string2filestring
    
    vlt.file.text2cellnum
    
    vlt.file.text2cellstr
    
    vlt.file.textfile2char
    
    vlt.file.tidypathstring
    
    vlt.file.touch
    
    vlt.file.vcard2mat
    
    vlt.file.writelabviewarray
    
    vlt.file.writeplainmat
    
    custom_file_formats PACKAGE
    custom_file_formats PACKAGE
    
    vlt.file.custom_file_formats.addroirawdatafile
    
    vlt.file.custom_file_formats.addvhlspikewaveformfile
    
    vlt.file.custom_file_formats.convertvhlvdatafile2integer
    
    vlt.file.custom_file_formats.newroirawdatafile
    
    vlt.file.custom_file_formats.newvhlspikewaveformfile
    
    vlt.file.custom_file_formats.readcellvoyagertiffheader
    
    vlt.file.custom_file_formats.readroirawdatafile
    
    vlt.file.custom_file_formats.readvhlspikewaveformfile
    
    vlt.file.custom_file_formats.readvhlvdatafile
    
    vlt.file.custom_file_formats.readvhlvdatafile_orig
    
    vlt.file.custom_file_formats.readvhlvheaderfile
    
    vlt.file.custom_file_formats.vhsb_read
    
    vlt.file.custom_file_formats.vhsb_readheader
    
    vlt.file.custom_file_formats.vhsb_sampletype2matlabfwritestring
    
    vlt.file.custom_file_formats.vhsb_write
    
    vlt.file.custom_file_formats.vhsb_writeheader
    
    vlt.file.custom_file_formats.writevhlvdatafile
    
    vlt.file.custom_file_formats.writevhlvheaderfile
    
    vlt.file.custom_file_formats.writevhlvtestfile
    
    xml PACKAGE
    xml PACKAGE
    
    vlt.file.xml.getXMLNodeText
    
    vlt.file.xml.parseXML
    
    vlt.file.xml.xml2struct_vhtools
    
    vlt.file.xml.xmlstringinput
    
    vlt.file.xml.xmlstruct_attributename2struct
    
    vlt.file.xml.xmlstruct_findnode
    
    vlt.file.xml.xmlstruct_stripwhitespace
    
    testfiles FOLDER
    testfiles FOLDER
    
    vlt.file/testfiles.testfile_freadnskip
    
    vlt.file/testfiles.testfile_uint16_bin
  - fit PACKAGE
    fit PACKAGE
    
    vlt.fit.dogfit
    
    vlt.fit.double_gauss_DoG_fit
    
    vlt.fit.example_double_gauss_dog_data
    
    vlt.fit.exp_fit
    
    vlt.fit.exp_fit_err
    
    vlt.fit.fitsearchspace
    
    vlt.fit.gaussfit
    
    vlt.fit.gaussfit_constraints
    
    vlt.fit.gaussfit_conv
    
    vlt.fit.gaussfit_err
    
    vlt.fit.gausslogfit
    
    vlt.fit.gaussspotfit
    
    vlt.fit.gaussspotfit_mod
    
    vlt.fit.gaussspotfit_nk
    
    vlt.fit.gaussspotfit_nopos_surr
    
    vlt.fit.gaussspotfit_noposition
    
    vlt.fit.gaussspotfit_skew
    
    vlt.fit.linepowerthreshold
    
    vlt.fit.linepowerthresholdfit
    
    vlt.fit.linethresholdfit
    
    vlt.fit.naka_rushton
    
    vlt.fit.naka_rushton_err
    
    vlt.fit.naka_rushton_func
    
    vlt.fit.naka_rushton_slope
    
    vlt.fit.otfit_carandini
    
    vlt.fit.otfit_carandini0
    
    vlt.fit.otfit_carandini2
    
    vlt.fit.otfit_carandini_conv
    
    vlt.fit.otfit_carandini_conv0
    
    vlt.fit.otfit_carandini_conv2
    
    vlt.fit.otfit_carandini_err
    
    vlt.fit.otfit_carandini_err0
    
    vlt.fit.otfit_carandini_err2
    
    vlt.fit.otfit_carandini_err_joint
    
    vlt.fit.seriesresfit
    
    vlt.fit.seriesresfit_err
    
    vlt.fit.sin4_fit
    
    vlt.fit.skewgaussfit_constraints
    
    vlt.fit.tanhfit
    
    vlt.fit.tanhfitoffset
  - git PACKAGE
    git PACKAGE
    
    vlt.git.git_assert
    
    vlt.git.git_clone
    
    vlt.git.git_install
    
    vlt.git.git_isgitdirectory
    
    vlt.git.git_pull
    
    vlt.git.git_repo_version
    
    vlt.git.git_stash
    
    vlt.git.git_status
  - graph PACKAGE
    graph PACKAGE
    
    vlt.graph.dependency_graph
    
    vlt.graph.mergegraph
  - html PACKAGE
    html PACKAGE
    
    vlt.html.alumni_htmltable
    
    vlt.html.vhlab_people_html
  - image PACKAGE
    image PACKAGE
    
    vlt.image.circular_filter
    
    vlt.image.doublethreshold
    
    vlt.image.doublethresholdresegment
    
    vlt.image.driftcheck
    
    vlt.image.findroiinlinescan
    
    vlt.image.image_samplepoints
    
    vlt.image.image_samplerange
    
    vlt.image.image_viewer_gui
    
    vlt.image.imshift
    
    vlt.image.inside_ellipse
    
    vlt.image.inside_rect
    
    vlt.image.invertcolors
    
    vlt.image.linescan2rasterindex
    
    vlt.image.medfilt_phase
    
    vlt.image.mergeluts
    
    vlt.image.neighborindexes
    
    vlt.image.padimage
    
    vlt.image.plotrasterroionlinescan
    
    vlt.image.polyflare
    
    vlt.image.prevailing_orientation
    
    vlt.image.regionprops_circularity
    
    vlt.image.saturation_image
    
    vlt.image.scramblepixels_movie
    
    vlt.image.selectsubimage
    
    vlt.image.stack2tile
    
    vlt.image.tiff16bit28bit
    
    vlt.image.writetif
    
    vlt.image.xcorr2dlag
    
    roi PACKAGE
    roi PACKAGE
    
    vlt.image.roi.ROI_3d2dprojection
    
    vlt.image.roi.ROI_3d_2dsummary
    
    vlt.image.roi.ROI_3d_all_overlaps
    
    vlt.image.roi.ROI_3d_max_xy_size
    
    vlt.image.roi.ROI_3d_overlap
    
    vlt.image.roi.ROI_3dplot2d
    
    vlt.image.roi.ROI_assignneighbors
    
    vlt.image.roi.ROI_bestcolocalization
    
    vlt.image.roi.ROI_centerofmassdistance
    
    vlt.image.roi.ROI_flare_indexes
    
    vlt.image.roi.ROI_flare_indexes_buggy
    
    vlt.image.roi.ROI_imageexample
    
    vlt.image.roi.ROI_isolate
    
    vlt.image.roi.ROI_resegment
    
    vlt.image.roi.ROI_resegment_all
    
    vlt.image.roi.ROI_subset
    
    imseq FOLDER
    imseq FOLDER
    
    vlt.image/imseq.imseq
    
    vlt.image/imseq.imseq_matlab
  - math PACKAGE
    math PACKAGE
    
    vlt.math.angdiff
    
    vlt.math.angdiffwrap
    
    vlt.math.angdiffwrapsign
    
    vlt.math.angles2nsew
    
    vlt.math.asymmetric_gaussian
    
    vlt.math.bandwidth
    
    vlt.math.cartesian2compass
    
    vlt.math.cas
    
    vlt.math.center_of_mass
    
    vlt.math.clip
    
    vlt.math.cluster_points_gui
    
    vlt.math.compass2cartesian
    
    vlt.math.complex2vector
    
    vlt.math.cov_of_cloud
    
    vlt.math.dangdiffwrap
    
    vlt.math.deg2rad
    
    vlt.math.dist2line
    
    vlt.math.divide_nozero
    
    vlt.math.dog
    
    vlt.math.dog2dogf
    
    vlt.math.dogf2dog
    
    vlt.math.dogfull
    
    vlt.math.double_exp
    
    vlt.math.double_gauss_180
    
    vlt.math.double_gauss_DoG
    
    vlt.math.double_gauss_dog_plot
    
    vlt.math.double_gaussian_plot
    
    vlt.math.ellipse_on_mvnpdf
    
    vlt.math.ellipse_on_mvnpdf_nk_x0
    
    vlt.math.ellipse_on_mvnpdf_nopos_surr_x0
    
    vlt.math.ellipse_on_mvnpdf_noposition_x0
    
    vlt.math.ellipse_on_mvnpdf_x0
    
    vlt.math.ellipse_on_mvnskewpdf
    
    vlt.math.ellipse_on_mvnskewpdf_x0
    
    vlt.math.eucnorm
    
    vlt.math.floorfloor
    
    vlt.math.fouriercoeffs
    
    vlt.math.fouriercoeffs_2d
    
    vlt.math.fouriercoeffs_tf
    
    vlt.math.fouriercoeffs_tf2
    
    vlt.math.fouriercoeffs_tf_spikes
    
    vlt.math.gauss2d_ellipse
    
    vlt.math.gausslog
    
    vlt.math.generate_random_data
    
    vlt.math.group_enumeration
    
    vlt.math.inside
    
    vlt.math.insideorborder
    
    vlt.math.interval2continuous
    
    vlt.math.interval_add
    
    vlt.math.interval_notation
    
    vlt.math.interval_subtract
    
    vlt.math.intnchoosek
    
    vlt.math.linearize_complex_discrete
    
    vlt.math.local_max
    
    vlt.math.magsqrt
    
    vlt.math.meshgridarea
    
    vlt.math.mod_ellipse_on_mvnpdf
    
    vlt.math.mod_ellipse_on_mvnpdf_x0
    
    vlt.math.mvnskewpdf
    
    vlt.math.normalizebounds
    
    vlt.math.oriented_grid
    
    vlt.math.phase_advance
    
    vlt.math.prctile01
    
    vlt.math.prctile20
    
    vlt.math.ptontoline
    
    vlt.math.ptontovector
    
    vlt.math.pts2line
    
    vlt.math.rad2deg
    
    vlt.math.rect2rect
    
    vlt.math.rectify
    
    vlt.math.refl2d
    
    vlt.math.rescale
    
    vlt.math.rescale_subrect
    
    vlt.math.rot2d
    
    vlt.math.rot3d
    
    vlt.math.sample_difference_error
    
    vlt.math.scale2d
    
    vlt.math.single_gaussian_plot
    
    vlt.math.skewgauss
    
    vlt.math.slidingwindowfunc
    
    vlt.math.slidingwindowfunc2
    
    vlt.math.stepfunc
    
    vlt.math.vector2mesh
    
    identity_tests FOLDER
    identity_tests FOLDER
    
    vlt.math/identity_tests.autocorr_step_white_poles
    
    vlt.math/identity_tests.autocorr_step_zeros
    
    vlt.math/identity_tests.geometric_identities_tests
  - matlab PACKAGE
    matlab PACKAGE
    
    vlt.matlab.findfunctionusedir
    
    vlt.matlab.findfunctionusefile
    
    vlt.matlab.isa_text
    
    vlt.matlab.isclassfile
    
    vlt.matlab.isfunctionfile
    
    vlt.matlab.matlabvers
    
    vlt.matlab.mfile2package
    
    vlt.matlab.mfiledirinfo
    
    vlt.matlab.mfileinfo
    
    vlt.matlab.packagenamereplacementtable
    
    vlt.matlab.replacefunction
    
    vlt.matlab.vlt_build
    
    graphics PACKAGE
    graphics PACKAGE
    
    vlt.matlab.graphics.cubeplot3d
    
    vlt.matlab.graphics.getline_3dplane
    
    vlt.matlab.graphics.grect2local
    
    vlt.matlab.graphics.isinwhere
    
    vlt.matlab.graphics.normalized2pixels
    
    vlt.matlab.graphics.pcolordummyrowcolumn
    
    vlt.matlab.graphics.pixels2normalized
    
    vlt.matlab.graphics.savefigurelist
    
    vlt.matlab.graphics.selectpoints3d
    
    vlt.matlab.graphics.viewpoint3dto2d
  - music PACKAGE
    music PACKAGE
    
    vlt.music.tone
  - neuro PACKAGE
    neuro PACKAGE
    
    anatomy PACKAGE
    anatomy PACKAGE
    
    vlt.neuro.anatomy.calc_cluster_index
    
    demos PACKAGE
    demos PACKAGE
    
    vlt.neuro.demos.demo_illustrate_facespace_build
    
    vlt.neuro.demos.nbio140_wholecell
    
    membrane PACKAGE
    membrane PACKAGE
    
    vlt.neuro.membrane.generate_normal_vm_fr
    
    vlt.neuro.membrane.generate_poisson_vm_fr
    
    vlt.neuro.membrane.mle_normal_vm_fr
    
    vlt.neuro.membrane.mle_poisson_vm_fr
    
    vlt.neuro.membrane.normal_vm_fr
    
    vlt.neuro.membrane.plot_voltage_firingrate_observations
    
    vlt.neuro.membrane.poisson_vm_fr
    
    vlt.neuro.membrane.spikeFWHM
    
    vlt.neuro.membrane.spikekink
    
    vlt.neuro.membrane.spikewavetrimmer
    
    vlt.neuro.membrane.vmnospikes
    
    vlt.neuro.membrane.voltage_firingrate_observations
    
    vlt.neuro.membrane.voltage_firingrate_observations_per_stimulus
    
    minis PACKAGE
    minis PACKAGE
    
    vlt.neuro.minis.minidetection
    
    vlt.neuro.minis.minidetectionsimulation
    
    vlt.neuro.minis.minitemplates
    
    mledenoise PACKAGE
    mledenoise PACKAGE
    
    vlt.neuro.mledenoise.MLE_PoisGauss
    
    vlt.neuro.mledenoise.SlowMLEDeNoise
    
    vlt.neuro.mledenoise.gaindriftexample
    
    vlt.neuro.mledenoise.response_gaindrift_model
    
    vlt.neuro.mledenoise.testSlowMLE
    
    vlt.neuro.mledenoise.testSlowMLE_modulation
    
    archived_code FOLDER
    archived_code FOLDER
    
    vlt.neuro.mledenoise/archived_code.MLE_Gauss
    
    vlt.neuro.mledenoise/archived_code.MLE_Pois
    
    vlt.neuro.mledenoise/archived_code.slowdenoise
    
    models PACKAGE
    models PACKAGE
    
    hh PACKAGE
    hh PACKAGE
    
    vlt.neuro.models.hh.HHclass
    
    vlt.neuro.models.hh.HHsynclass
    
    vlt.neuro.models.hh.neuronmodelclass
    
    ode PACKAGE
    ode PACKAGE
    
    vlt.neuro.models.ode.simpleodedemo
    
    synapses PACKAGE
    synapses PACKAGE
    
    vlt.neuro.models.synapses.depression_model_comp
    
    vlt.neuro.models.synapses.depression_model_err
    
    vlt.neuro.models.synapses.depression_model_fit
    
    vlt.neuro.models.synapses.nmda_voltage_gate
    
    vlt.neuro.models.synapses.probabilistic_release
    
    reverse_correlation PACKAGE
    reverse_correlation PACKAGE
    
    vlt.neuro.reverse_correlation.createdirkernel
    
    vlt.neuro.reverse_correlation.reverse_correlation_mv_stepfunc
    
    vlt.neuro.reverse_correlation.reverse_correlation_stepfunc
    
    vlt.neuro.reverse_correlation.reverse_correlation_stepfunc_old
    
    vlt.neuro.reverse_correlation.simulate_1dkernel_response
    
    vlt.neuro.reverse_correlation.sparse_noise_responses
    
    vlt.neuro.reverse_correlation.spike_triggered_average_stepfunc
    
    vlt.neuro.reverse_correlation.stim1d_motion
    
    vlt.neuro.reverse_correlation.stim1d_random
    
    demos PACKAGE
    demos PACKAGE
    
    vlt.neuro.reverse_correlation.demos.DirRFModelTestCode
    
    vlt.neuro.reverse_correlation.demos.DirRFModel_example0
    
    vlt.neuro.reverse_correlation.demos.DirRFModel_example1
    
    vlt.neuro.reverse_correlation.demos.DirRFModel_example2
    
    vlt.neuro.reverse_correlation.demos.DirRFModel_example3
    
    vlt.neuro.reverse_correlation.demos.DirRFModel_example3_old
    
    vlt.neuro.reverse_correlation.demos.RandomRDTestCode
    
    hartley PACKAGE
    hartley PACKAGE
    
    vlt.neuro.reverse_correlation.hartley.build
    
    vlt.neuro.reverse_correlation.hartley.check
    
    vlt.neuro.reverse_correlation.hartley.draw
    
    vlt.neuro.reverse_correlation.hartley.hartley_image
    
    spikesorting PACKAGE
    spikesorting PACKAGE
    
    vlt.neuro.spikesorting.centerspikes_neg
    
    vlt.neuro.spikesorting.cluster_spikewaves_gui
    
    vlt.neuro.spikesorting.cluster_spikewaves_trivial
    
    vlt.neuro.spikesorting.fitspike_neg
    
    vlt.neuro.spikesorting.oversamplespikes
    
    vlt.neuro.spikesorting.plotspikewaves
    
    vlt.neuro.spikesorting.spikewaves2Npointfeature
    
    vlt.neuro.spikesorting.spikewaves2pca
    
    spiketrains PACKAGE
    spiketrains PACKAGE
    
    vlt.neuro.spiketrains.interspikeinterval
    
    vlt.neuro.spiketrains.loglikelihood_spikerate
    
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    membrane_voltage FOLDER
    
    generate_normal_vm_fr
    
    generate_poisson_vm_fr
    
    mle_normal_vm_fr
    
    mle_poisson_vm_fr
    
    normal_vm_fr
    
    plot_voltage_firingrate_observations
    
    poisson_vm_fr
    
    spikeFWHM
    
    spikekink
    
    spikewavetrimmer
    
    vmnospikes
    
    voltage_firingrate_observations
    
    voltage_firingrate_observations_per_stimulus
  - minis FOLDER
    minis FOLDER
    
    minidetection
    
    minidetectionsimulation
    
    minitemplates
  - mledenoise FOLDER
    mledenoise FOLDER
    
    MLE_PoisGauss
    
    SlowMLEDeNoise
    
    gaindriftexample
    
    response_gaindrift_model
    
    testSlowMLE
    
    testSlowMLE_modulation
    
    archived_code FOLDER
    archived_code FOLDER
    
    MLE_Gauss
    
    MLE_Pois
    
    slowdenoise
  - models FOLDER
    models FOLDER
    
    hh FOLDER
    hh FOLDER
    
    HHclass
    
    HHsynclass
    
    neuronmodelclass
    
    modelel FOLDER
    modelel FOLDER
    
    modelel FOLDER
    modelel FOLDER
    
    modelel_init
    
    modelel_reset
    
    modeleldemo FOLDER
    modeleldemo FOLDER
    
    directionselectivity4cell_learning1
    
    directionselectivity4cell_random
    
    directionselectivity4celldemo
    
    directionselectivityNcell_GsynAP
    
    directionselectivityNcell_learning1
    
    directionselectivityNcell_learning2
    
    directionselectivityNcell_learning_thresh
    
    directionselectivityNcell_random
    
    directionselectivityNcelldemo
    
    directionselectivityNcelldemo_inhib
    
    directionselectivityNcelldemo_inhib_orig
    
    directionselectivityNcelldemo_thresh
    
    intfireleaky_GsynAP
    
    intfireleaky_Gsyn_vs_F
    
    intfireleaky_SynMemTau
    
    intfireleaky_currentdemo
    
    intfireleaky_synapsedemo
    
    plotdirectionselectivity4cell
    
    plotdirectionselectivity4cell_thresh
    
    synapseel_stdpdemo
    
    modelelrun FOLDER
    modelelrun FOLDER
    
    modelel_convertforc
    
    modelel_convertfromc
    
    modelel_importvariables
    
    modelel_runvarname2log
    
    modelelrun
    
    modelelrun_executable
    
    neuronmodelel FOLDER
    neuronmodelel FOLDER
    
    isspiking
    
    neuronmodelel
    
    intfiremodels FOLDER
    intfiremodels FOLDER
    
    intfireleakyel_init
    
    intfireleakyel_step
    
    spiketimelistel FOLDER
    spiketimelistel FOLDER
    
    spiketimelistel_init
    
    spiketimelistel_step
    
    synapseel FOLDER
    synapseel FOLDER
    
    modelelgetsyn
    
    modelelsynconn
    
    plasticity_methods FOLDER
    plasticity_methods FOLDER
    
    synapseel_stdp
    
    synapset1t2el FOLDER
    synapset1t2el FOLDER
    
    synapset1t2el_init
    
    synapset1t2el_step
    
    ode FOLDER
    ode FOLDER
    
    simpleodedemo
    
    synapses FOLDER
    synapses FOLDER
    
    depression_model_comp
    
    depression_model_err
    
    depression_model_fit
    
    nmda_voltage_gate
    
    probabilistic_release
  - reverse_correlation FOLDER
    reverse_correlation FOLDER
    
    createdirkernel
    
    reverse_correlation_mv_stepfunc
    
    reverse_correlation_stepfunc
    
    reverse_correlation_stepfunc_old
    
    simulate_1dkernel_response
    
    spike_triggered_average_stepfunc
    
    stim1d_motion
    
    stim1d_random
    
    demos FOLDER
    demos FOLDER
    
    DirRFModelTestCode
    
    DirRFModel_example0
    
    DirRFModel_example1
    
    DirRFModel_example2
    
    DirRFModel_example3
    
    DirRFModel_example3_old
    
    RandomRDTestCode
    
    hartley FOLDER
    hartley FOLDER
    
    hartley_image
  - spikesorting FOLDER
    spikesorting FOLDER
    
    centerspikes_neg
    
    cluster_spikewaves_gui
    
    cluster_spikewaves_trivial
    
    fitspike_neg
    
    oversamplespikes
    
    plotspikewaves
    
    spikewaves2Npointfeature
    
    spikewaves2pca
  - spiketrains FOLDER
    spiketrains FOLDER
    
    interspikeinterval
    
    loglikelihood_spikerate
    
    loglikelihood_spiketrain
    
    make_psth
    
    plot_psth
    
    spikeresponse
    
    spikeresponse_tf
    
    spiketimes2bins
    
    spiketimes_correlation
    
    spiketimes_correlation_timeshiftsubtract
    
    spiketimes_plot
    
    spiketrain2rate
    
    spiketrain_poisson_n
    
    spiketrain_powerspectrum
    
    spiketrain_powerspectrum_window
    
    spiketrain_sinusoidal
    
    spiketrain_timingcorrelated
  - stdp FOLDER
    stdp FOLDER
    
    ltpi_apply
    
    ltpi_test
    
    sjostrom_freq_stdp
    
    sjostrom_spiketrain
    
    stdp_apply
    
    stdp_eltpi_apply
    
    stdp_study
    
    stdp_study_plotspiketrains
    
    stdp_test
    
    stdp_triplet_apply
    
    stdp_tripletvscorrelation
    
    stdp_tripletvsratecorrelation
  - stimulus_analysis FOLDER
    stimulus_analysis FOLDER
    
    descramble_pseudorandom
    
    findcontrolstimulus
    
    generate_test_stimulus_responses
    
    plot_stimulus_timeseries
    
    stimids2reps
    
    stimulus_response_scalar
    
    stimulus_response_stats
    
    stimulus_response_summary
    
    trimrespcurve
  - vision FOLDER
    vision FOLDER
    
    curved_monitor_view
    
    make3dbar
    
    make3dwords2
    
    simp_sat_cgain
    
    squirrelcolor
    
    stereopoint
    
    visual_stim_row_correlator
    
    contrast FOLDER
    contrast FOLDER
    
    indexes FOLDER
    indexes FOLDER
    
    contrastfit2c50
    
    contrastfit2relativemaximumgain
    
    contrastfit2saturationindex
    
    oridir FOLDER
    oridir FOLDER
    
    dirspace2orispace
    
    dsi2dirparams
    
    osi2oriparams
    
    osi2oriparams2
    
    rotated_oripref_stats
    
    rotatedircurve
    
    vector_direction_pref
    
    indexes FOLDER
    indexes FOLDER
    
    compute_circularvariance
    
    compute_dircircularvariance
    
    compute_directionindex
    
    compute_directionsignificancedotproduct
    
    compute_dirvecconstrainedori
    
    compute_dirvecdotorivec
    
    compute_halfwidth
    
    compute_orientationindex
    
    compute_orientationvector
    
    compute_tuningwidth
    
    fit2fitdi
    
    fit2fitdibr
    
    fit2fitdibr_orig
    
    fit2fitdidiffsum
    
    fit2fitdr_angle
    
    fit2fitoi
    
    fit2fitoidiffsum
    
    fit2null
    
    fit2orth
    
    fit2pref
    
    oridir_fitindexes
    
    oridir_vectorindexes
    
    plotting FOLDER
    plotting FOLDER
    
    polarplot_dir
    
    polarplot_ori
- not_packaged FOLDER
  not_packaged FOLDER
  - archived_code FOLDER
    archived_code FOLDER
    
    modelel FOLDER
    modelel FOLDER
    
    modelel FOLDER
    modelel FOLDER
    
    modelel_init
    
    modelel_reset
    
    modeleldemo FOLDER
    modeleldemo FOLDER
    
    directionselectivity4cell_learning1
    
    directionselectivity4cell_random
    
    directionselectivity4celldemo
    
    directionselectivityNcell_GsynAP
    
    directionselectivityNcell_learning1
    
    directionselectivityNcell_learning2
    
    directionselectivityNcell_learning_thresh
    
    directionselectivityNcell_random
    
    directionselectivityNcelldemo
    
    directionselectivityNcelldemo_inhib
    
    directionselectivityNcelldemo_inhib_orig
    
    directionselectivityNcelldemo_thresh
    
    intfireleaky_GsynAP
    
    intfireleaky_Gsyn_vs_F
    
    intfireleaky_SynMemTau
    
    intfireleaky_currentdemo
    
    intfireleaky_synapsedemo
    
    plotdirectionselectivity4cell
    
    plotdirectionselectivity4cell_thresh
    
    synapseel_stdpdemo
    
    modelelrun FOLDER
    modelelrun FOLDER
    
    modelel_convertforc
    
    modelel_convertfromc
    
    modelel_importvariables
    
    modelel_runvarname2log
    
    modelelrun
    
    modelelrun_executable
    
    neuronmodelel FOLDER
    neuronmodelel FOLDER
    
    isspiking
    
    neuronmodelel
    
    intfiremodels FOLDER
    intfiremodels FOLDER
    
    intfireleakyel_init
    
    intfireleakyel_step
    
    spiketimelistel FOLDER
    spiketimelistel FOLDER
    
    spiketimelistel_init
    
    spiketimelistel_step
    
    synapseel FOLDER
    synapseel FOLDER
    
    modelelgetsyn
    
    modelelsynconn
    
    plasticity_methods FOLDER
    plasticity_methods FOLDER
    
    synapseel_stdp
    
    synapset1t2el FOLDER
    synapset1t2el FOLDER
    
    synapset1t2el_init
    
    synapset1t2el_step
- office FOLDER
  office FOLDER
  - addresslabels2pdf
  - vcarddata2addresslabels
- optics FOLDER
  optics FOLDER
  - ideal_optical_transfer_function
  - optics_tables FOLDER
    optics_tables FOLDER
    
    luminous_efficacy
    
    optics_table
- paths FOLDER
  paths FOLDER
  - pathstr2cellarray
- pcb FOLDER
  pcb FOLDER
  - KiCadGerber2OSHPark
- plotting FOLDER
  plotting FOLDER
  - arrowplot
  - autohistogram
  - autoplacetext
  - cleanfig
  - colorlist
  - ctable
  - cumhist
  - drawbarinimage
  - drawshape
  - hist2d
  - hist2line
  - imagedisplay
  - intline
  - matchaxes
  - median_within_between_plot
  - movetoback
  - movetofront
  - myerrorbar
  - plot_multichan
  - plotbargraphwithdata
  - plotmeanbar
  - plotoribox
  - plotshade
  - posterize
  - quickhist
  - scatterplot
  - shiftedbar
  - supersubplot
- signal FOLDER
  signal FOLDER
- spreadsheet FOLDER
  spreadsheet FOLDER
  - spreadsheet_filterbydate
  - spreadsheet_multiplechoice
- stats FOLDER
  stats FOLDER
- string FOLDER
  string FOLDER
- time FOLDER
  time FOLDER
- user_interface FOLDER
  user_interface FOLDER

update¶

  NEWDS = UPDATE(MYDIRSTRUCT)

   Examines the path of the DIRSTRUCT and updates all of the structures.

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